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D. Xiao, R. K. Orange, N. Opatovski, A. Parizat, E. Nehme, O. Alalouf, Y. Shechtman. "Large-FOV 3D localization microscopy by spatially variant point spread function generation". Science Advances 10, eadj3656 (2024)

M. Fazel, K. S. Grussmayer, B. Ferdman, A. Radenovic, Y. Shechtman, J. Enderlein, S. Pressé. "Fluorescence Microscopy: a statistics-optics perspective". Reviews of Modern Physics (2024)

Y. Nogin, D. Sapir, T. D. Zur, N. Weinberger, Y. Belinkov, Y. Ebenstein, Y. Shechtman. "OM2Seq: Learning retrieval embeddings for optical genome mapping". bioRxiv 2023.11.20.567868 (2023)

D. Xiao, Z. Lin, Y. Shechtman. "All-in-focus large-FOV GRIN lens imaging by multi-focus image fusion". Optics Continuum 2, 11, 2290-2297 (2023)

Y. Nogin, D. Bar-Lev, D. Hanania, T. D. Zur, Y. Ebenstein, E. Yaakobi, N. Weinberger, Y. Shechtman. "Design of optimal labeling patterns for optical genome mapping via information theory". Bioinformatics 39, 10 (2023)

S. Jang, K. K. Narayanasamy, J. V. Rahm, A. Saguy, J. Kompa, M. S. Dietz, K. Johnsson, Y. Shechtman, M. Heilemann. "Neural network-assisted single-molecule localization microscopy with a weak-affinity protein tag". Biophysical Reports 18, 3(3),100123 (2023)

R. O. Kedem, N. Opatovski, D. Xiao, B. Ferdman, O. Alalouf, S. K. Pal, Z. Wang, H. Emde, M. Weber, S. J. Sahl, A. Ponjavic, A. Arie, S. W. Hell, Y. Shechtman.  "Near index matching enables solid diffractive optical element fabrication via additive manufacturing". Light: Science & Applications, 12(1), 222 (2023)

A. Saguy, O. Alalouf, N. Opatovski, S. Jang, M. Heilemann and Y. Shechtman. "DBlink: Dynamic localization microscopy in super spatiotemporal resolution via deep learning". Nature Methods (2023)

A. Saguy, T. Nahimov, M. Lehrman, O. Alalouf, Y. Shechtman. "This microtubule does not exist: Super-resolution microscopy image generation by a diffusion model". bioRxiv 2023.07.06.548004 (2023)

V. Giovanni, et al. "Roadmap on Deep Learning for Microscopy". arXiv preprint arXiv:2303.03793 (2023)‏

Y. Nogin, T. D. Zur, S. Margalit, I. Barzilai, O. Alalouf, Y. Ebenstein, Y. Shechtman, "DeepOM: Single-molecule optical genome mapping via deep learning", Bioinformatics (2023)

O. Goldenberg, B. Ferdman, E. Nehme, Y. S. Ezra, Y. Shechtman. "Learning Optimal Multicolor PSF Design for 3D Pairwise Distance Estimation". Intelligent Computing, Vol 2022, 0004 (2022)

N. Opatovski, D. Xiao, G. Harari, Y. Shechtman. "Monocular kilometer-scale passive ranging by point-spread function engineering". Optics Express, 30 (21), 37925-37937 (2022)

R. Eshel, V. Frumkin, M. Nice, O. Luria, B. Ferdman, N. Opatovski, K. Gommed, M. Shusteff, Y. Shechtman, M. Bercovici. "Programmable thermocapillary shaping on thin liquid films". Flow, 2, E27 (2022)

B. Ferdman, A. Saguy, D. Xiao, and Y. Shechtman. "Diffractive optical system design by cascaded propagation". Optics Express, 30 (15), 27509-27530 (2022).

E. Sedov, E. Koren, S. Chopra, R. Ankawa, Y. Yosefzon, M. Yusupova, L. E. Weiss, A. Mahly, A. Soffer, A. Feldman, C. Luxenburg, Y. Shechtman, and Y. Fuchs. "THY1-mediated mechanisms converge to drive YAP activation in skin homeostasis and repair". Nature Cell Biology (2022).

O. Adir, M. R. Albalik, R. Abel, L. E. Weiss, G. Chen, A. Gruber, O. Staufer, Y. Kurman, I. Kaminer, J. S. Roitman, I. Platzman, L. Gepstein, Y. Shechtman, B. A. Horwitz, A. Scheroeder. "Synthetic cells with self-activating optogenetic proteins communicate with natural cells".  Nature Communications, 13, 2328 (2022)

T. Naor, Y. Nogin, E. Nehme, B. Ferdman, L. E. Weiss, O. Alalouf, and Y. Shechtman. "Quantifying cell cycle dependent chromatin dynamics during interphase by live 3D tracking", iScience, 104197 (2022)

D. Allen, L.E. Weiss, A. Saguy, M. Rosenberg, O. Iancu, O. Matalon, C. Lee, K. Beider, A. Nagler, Y. Shechtman, and A. Hendel, "High-throughput Imaging of CRISPR- and Recombinant Adeno-associated Virus–induced DNA Damage Response in Human Hematopoietic Stem and Progenitor Cells", The CRISPR Journal (2022)

A. Saguy, F. Jünger, A. Peleg, B. Ferdman, E. Nehme, A. Rohrbach, and Y. Shechtman, "Deep-ROCS: from speckle patterns to superior-resolved images by deep learning in rotating coherent scattering microscopy", Optics Express, 29 (15), 23877-23887 (2021)

N. Opatovski, Y. S. Ezra, L. E. Weiss, B. Ferdman, R. Orange and Y. Shechtman, "Multiplexed PSF Engineering for Three-Dimensional Multicolor Particle Tracking", Nano Letters (2021)

E. Nehme*, B. Ferdman*, L. E. Weiss; T. Naor; D. Freedman; T. Michaeli; Y. Shechtman. "Learning optimal wavefront shaping for multi-channel imaging", in IEEE Transactions on Pattern Analysis and Machine Intelligence (2021). (*equal contribution)

A. Saguy, T. N. Baldering, L. E. Weiss, E. Nehme, C. Karathanasis, M. S. Dietz, M. Heilemann, and Y. Shechtman, "Automated Analysis of Fluorescence Kinetics in Single-Molecule Localization Microscopy Data Reveals Protein Stoichiometry", The Journal of Physical Chemistry B, 125, 22, 5716–5721 (2021)

R. Orange-Kedem, E. Nehme, L. E. Weiss, B. Ferdman, O. Alalouf, N. Opatovski and Y. Shechtman, "3D printable diffractive optical elements by liquid immersion", Nature Communications 12, 3067 (2021)

L. von Chamier, R. F. Laine, J. Jukkala, C. Spahn, D. Krentzel, E. Nehme, M. Lerche, S. Hernández-Pérez, P. K. Mattila, E. Karinou, S. Holden, A. Can Solak, A. Krull, T.O. Buchholz, M. L. Jones, L. A. Royer, C. Leterrier, Y. Shechtman, F. Jug, M. Heilemann, G. Jacquemet & R. Henriques, "Democratising deep learning for microscopy with ZeroCostDL4Mic", Nature Communications, 12, 2276 (2021) 

R. Gordon-Soffer, L. E. Weiss, R. Eshel, B. Ferdman, E. Nehme, M. Bercovici, and Y. Shechtman. "Microscopic scan-free surface profiling over extended axial ranges by point-spread-function engineering"Science Advances, 6, 44 (2020)

E. Nehme , D. Freedman, R. Gordon, B. Ferdman, L. E. Weiss, O. Alalouf, T. Naor, R. Orange, T. Michaeli and Y. Shechtman. "DeepSTORM3D: Dense 3D localization microscopy and PSF engineering by deep learning". Nature Methods, 17, 734–740 (2020)

L.E. Weiss, Y. S. Ezra, S. E. Goldberg, B. Ferdman, O. Adir, A. Schroeder, O. Alalouf, Y. Shechtman. "Three-dimensional localization microscopy in live flowing cells"Nature Nanotechnology, 15, 500–506 (2020)

N. Granik, L.E. Weiss, E. Nehme, M. Shalom, M. Chein, E. Perlson, Y. Roichman, Y. Shechtman. "Single particle diffusion characterization by deep learning"Biophysical Journal, 117, 2, 185-192 (2019)

E. Hershko*, L.E. Weiss*, T. Michaeli, Y. Shechtman. "Multicolor localization microscopy and point-spread-function engineering by deep learning"Optics Express, 27, 5, 6158-6183 (2019) (*Equal Contribution)

E. Nehme, L.E. Weiss, T. Michaeli, and Y. Shechtman. "Deep-STORM: Super resolution single molecule microscopy by deep learning". Optica 4, 458-464 (2018)

A-K Gustavsson, P. N. Petrov, M. Y. Lee, Y. Shechtman, and W. E. Moerner. "3D Single-molecule super-resolution microscopy with a tilted light sheet". Nature Communications, 9, 123 (2018)

2017 and Earlier

Y. Shechtman, L.E. Weiss, A.S. Backer, M.Y. Lee,  and W.E. Moerner. "Multicolor localization microscopy by point-spread-function engineering". Nature Photonics, 10, (2016)

P. Sidorenko, O. Kfir, Y. Shechtman, A. Fleischer, Y. C. Eldar, M. Segev, and O. Cohen. "Sparsity-based super-resolved coherent diffraction imaging of one-dimensional objects". Nature Communications, 6, (2015)

Y. Shechtman, Y.C. Eldar, O. Cohen, H.N. Chapman, J. Miao and M. Segev. "Phase retrieval with application to optical imaging". IEEE Signal Processing Magazine, 32, 2,87-109 (2015)

Y. Shechtman, E. Small, Y. Lahini, M. Verbin, Y.C. Eldar, Y. Silberberg and M. Segev. "Sparsity-based super-resolution and phase-retrieval in waveguide arrays". Optics Express, 21, 20, 24015-24024 (2013)

Y. Shechtman, L.E. A. Szameit*, Y. Shechtman*, E. Osherovich*, E. Bullkich, P. Sidorenko, H. Dana, S. Steiner, E. B. Kley, S. Gazit, T. Cohen-Hyams, S. Shoham, M. Zibulevsky, I. Yavneh, Y. C. Eldar, O. Cohen, and M. Segev. "Sparsity-based single-shot subwavelength coherent diffractive imaging". Nature Materials, 11 (5), 455-459 (2012)  (*equal contribution)

R. Keil, Y. Lahini, Y. Shechtman, M. Heinrich, R. Pugatch, F. Dreisow, A. Tünnermann, S. Nolte, A. Szameit. "Perfect imaging through a disordered waveguide lattice". Optics Letters, 37 (5), 809-811 (2012)

Y. Lahini, Y. Bromberg, Y. Shechtman, A. Szameit, D.N. Christodoulides, R. Morandotti, and Y. Silberberg. "Hanbury Brown and Twiss correlations of Anderson localized waves". Physical Review A, 84, 41806 (2011)

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