Coding

SOFTWARE

Live 3D measurement of telomere diffusion offers an effective method to investigate Chromatin dynamics.

  • CCCDO is a MATLAB package using ensemble MSD analysis in order to quantify chromatin dynamics.

  • Python code: Trajectory extraction, using localization results of DeepSTORM3D and the raw image sequence in order to reconstruct telomere trajectories, frame-by-frame.

QAFKA (2021)

  • QAFKA is a deep learning based algorithm to estimate protein stoichiometry in cells by observing their blinking kinetics.

  • QAFKA repository contains google a colab notebook and a jupyter notebook for Anaconda.

VIPR

  • With work previously done by a former lab member, we have developed a powerful tool for use in the identification and characterization of the processes in our model system. A major advantage of this development is its improved sensitivity, which allows it to detect subtle dynamic property changes in response to our experimentation.

ANOMALOUS DIFFUSION DATABASE

DEEP-STORM